Data Sharing

Datasets from Transcriptional Heterogeneity of ventricular zone cell in the ganglionic eminences of the mouse forebrain external link (Lee DR et al., eLife 2022):

GSE167013 → scRNA-seq of E12.5 WT MGE, LGE, CGE and cortex (1 replicate each)
GSE190593 → scRNA-seq of E12.5 Nes-dVenus MGE, LGE, CGE (2 replicates each) and cortex (1 replicate),
scRNA-seq of E14.5 Nes-dVenus MGE, LGE and CGE (1 replicate), and
scRNA-seq of E14.5 WT MGE, LGE and CGE (1 replicate)

Datasets from An epigenome atlas of neural progenitors within the embryonic mouse forebrain external link (Rhodes CJ et al., bioRxiv 2021):

** All of the data described in this manuscript is publicly available in a searchable format on the UCSC Genome Browser and can be found at this link:  Embryonic Mouse Brain Epigenome Atlas **

GSE167013 → scRNA-seq of E12.5 WT MGE, LGE, CGE and cortex (1 replicate each)
GSE167016 → snRNA-seq of P30 Dlx6aCre;Sun1-GFP cortex and hippocampus (1 replicate each)
GSE167047 → snATAC-seq of E12.5 WT MGE, LGE, CGE and cortex (2 replicates each)
GSE167048 → snATAC-seq of P30 Dlx6aCre;Sunq-GFP cortex and hippocampus (2 replicates each)
GSE167050ALL of the above RNA-seq and ATAC-Seq files (GSE167013, 167016, 167047, 167048)

Datasets being processed, will post GSE links when finalized

GSEXXXXXX → H3K4me3 CUT&Tag of E12.5 WT MGE, LGE, CGE and cortex (2 replicates each)
GSEXXXXXX → H3K27me3 CUT&Tag of E12.5 WT MGE, LGE, CGE and cortex (2 replicates each)
GSEXXXXXX → H3K27ac CUT&RUN of E12.5 WT MGE, LGE, CGE and cortex (2 replicates each)
GSEXXXXXX → ALL of the above Cut&Tag and CUT&RUN data

GSEXXXXXX → Hi-C of E12.5 WT MGE, LGE, CGE and cortex (2 replicates each)
GSEXXXXXX → Capture-C of E12.5 WT MGE, LGE, CGE and cortex (2 replicates each)

Point of Contact POC Email
Tim Petros tim.petros@nih.gov
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